AP002498.1 (novel transcript) - Rat Genome Database

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Gene: AP002498.1 (novel transcript) Homo sapiens
Analyze
Symbol: AP002498.1
Name: novel transcript
RGD ID: 16560530
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1176,955,417 - 76,978,619 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:160
Count of miRNA genes:143
Interacting mature miRNAs:146
Transcripts:ENST00000390741, ENST00000530190
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 33 33 3 14 33
Low 795 18 17 114 208 7 85 16 51 23 245 132 109 18 57 1
Below cutoff 645 821 539 116 465 100 1777 542 1076 142 677 795 22 685 1035 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000530190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1176,955,417 - 76,978,619 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP002498.1 COSMIC
Ensembl Genes ENSG00000254988 Ensembl
GTEx ENSG00000254988 GTEx
Human Proteome Map AP002498.1 Human Proteome Map