AP000757.2 (novel transcript, antisense to FXYD2) - Rat Genome Database

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Gene: AP000757.2 (novel transcript, antisense to FXYD2) Homo sapiens
Analyze
Symbol: AP000757.2
Name: novel transcript, antisense to FXYD2
RGD ID: 16560457
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl11117,818,443 - 117,821,992 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:556
Count of miRNA genes:453
Interacting mature miRNAs:499
Transcripts:ENST00000531850, ENST00000596805
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 9 22 3 9 265 24 2 13
Low 1192 425 868 381 673 246 694 610 609 90 912 766 135 455 361
Below cutoff 755 1241 553 139 370 129 1729 885 1479 20 247 443 10 533 1097

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000531850
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11117,818,443 - 117,821,992 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP000757.2 COSMIC
Ensembl Genes ENSG00000254844 Ensembl
GTEx ENSG00000254844 GTEx
Human Proteome Map AP000757.2 Human Proteome Map