AP002336.2 (novel transcript) - Rat Genome Database

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Gene: AP002336.2 (novel transcript) Homo sapiens
Analyze
Symbol: AP002336.2
Name: novel transcript
RGD ID: 16560329
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1170,282,367 - 70,363,368 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:223
Count of miRNA genes:189
Interacting mature miRNAs:192
Transcripts:ENST00000528607
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 4 4 1 2 22 3 4
Low 1452 1846 1333 241 740 146 3345 1736 3362 274 1277 1317 104 841 2315 2
Below cutoff 923 909 330 327 731 264 934 432 338 135 136 256 65 349 429 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000528607
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1170,282,367 - 70,363,368 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AP002336.2 COSMIC
Ensembl Genes ENSG00000254604 Ensembl
GTEx ENSG00000254604 GTEx
Human Proteome Map AP002336.2 Human Proteome Map