AC087521.3 (novel transcript, sense overlapping C11orf96) - Rat Genome Database

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Gene: AC087521.3 (novel transcript, sense overlapping C11orf96) Homo sapiens
Analyze
Symbol: AC087521.3
Name: novel transcript, sense overlapping C11orf96
RGD ID: 16560226
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1143,921,059 - 44,001,157 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:268
Count of miRNA genes:245
Interacting mature miRNAs:263
Transcripts:ENST00000526408, ENST00000528226
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 64 8 52 17 154 17 72 31 148 109 446 155 5 4
Below cutoff 1955 1853 1318 429 1006 312 3179 1652 2999 277 891 1092 123 831 2129 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000526408
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1143,921,076 - 44,001,157 (+)Ensembl
RefSeq Acc Id: ENST00000528226
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1143,921,059 - 43,933,410 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC087521.3 COSMIC
Ensembl Genes ENSG00000254409 Ensembl
GTEx ENSG00000254409 GTEx
Human Proteome Map AC087521.3 Human Proteome Map