AC060788.1 (RNA binding motif protein 45 (RBM45) pseudogene) - Rat Genome Database

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Gene: AC060788.1 (RNA binding motif protein 45 (RBM45) pseudogene) Homo sapiens
Analyze
Symbol: AC060788.1
Name: RNA binding motif protein 45 (RBM45) pseudogene
RGD ID: 16560156
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl8131,712,512 - 131,712,980 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:110
Interacting mature miRNAs:110
Transcripts:ENST00000521318
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 1 1 1 1
Below cutoff 10 13 11 21 35 10 13 2 10 20 14 24

Sequence

Nucleotide Sequences

RefSeq Acc Id: ENST00000521318
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8131,712,512 - 131,712,980 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC060788.1 COSMIC
Ensembl Genes ENSG00000254255 Ensembl
GTEx ENSG00000254255 GTEx
Human Proteome Map AC060788.1 Human Proteome Map