AC104117.4 (F-box and WD repeat domain containing 2 (FBXW2) pseudogene) - Rat Genome Database

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Gene: AC104117.4 (F-box and WD repeat domain containing 2 (FBXW2) pseudogene) Homo sapiens
Analyze
Symbol: AC104117.4
Name: F-box and WD repeat domain containing 2 (FBXW2) pseudogene
RGD ID: 16560109
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: F-box and WD repeat domain containing 2 pseudogene; LOC100288803
Related Functional Gene: FBXW2  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385178,997,771 - 178,998,814 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5178,997,969 - 178,998,815 (-)EnsemblGRCh38hg38GRCh38
GRCh375178,424,772 - 178,425,815 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q35.3NCBI
HuRef5173,152,222 - 173,153,070 (-)NCBIHuRef
CHM1_15177,858,083 - 177,858,931 (-)NCBICHM1_1
T2T-CHM13v2.05179,551,033 - 179,552,076 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:227
Interacting mature miRNAs:246
Transcripts:ENST00000521486
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 4 1 7 1 32 1 2 2 51 1 20 7 1
Below cutoff 681 577 410 68 238 30 923 487 1892 41 663 348 38 239 609

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000521486
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5178,997,969 - 178,998,815 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC104117.4 COSMIC
Ensembl Genes ENSG00000254158 Ensembl, ENTREZGENE
GTEx ENSG00000254158 GTEx
Human Proteome Map AC104117.4 Human Proteome Map
NCBI Gene LOC100288803 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC104117.4  F-box and WD repeat domain containing 2 (FBXW2) pseudogene  LOC100288803  F-box and WD repeat domain containing 2 pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100288803  F-box and WD repeat domain containing 2 pseudogene  AC104117.4  F-box and WD repeat domain containing 2 (FBXW2) pseudogene  Symbol and/or name change 5135510 APPROVED