AC009435.1 (novel transcript) - Rat Genome Database

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Gene: AC009435.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC009435.1
Name: novel transcript
RGD ID: 16559981
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl86,044,353 - 6,257,537 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:90
Interacting mature miRNAs:90
Transcripts:ENST00000519555
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 4 9 8
Low 95 10 28 18 188 22 128 46 93 35 352 181 5 2 3
Below cutoff 140 73 111 39 140 37 315 53 854 59 247 130 4 56 144 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000519555
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl86,044,353 - 6,257,537 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC009435.1 COSMIC
Ensembl Genes ENSG00000253880 Ensembl
GTEx ENSG00000253880 GTEx
Human Proteome Map AC009435.1 Human Proteome Map