AC078906.1 (novel transcript) - Rat Genome Database

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Gene: AC078906.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC078906.1
Name: novel transcript
RGD ID: 16559689
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl872,196,334 - 72,202,269 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:66
Count of miRNA genes:64
Interacting mature miRNAs:64
Transcripts:ENST00000523602
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6 2 1 1 1
Low 576 1290 188 46 419 33 928 242 271 131 475 274 15 219 768
Below cutoff 1316 999 1131 404 569 274 2132 1366 1968 170 723 906 137 845 1238 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000523602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl872,196,334 - 72,202,269 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC078906.1 COSMIC
Ensembl Genes ENSG00000253317 Ensembl
GTEx ENSG00000253317 GTEx
Human Proteome Map AC078906.1 Human Proteome Map