UFM1P3 (UFM1 pseudogene 3) - Rat Genome Database

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Gene: UFM1P3 (UFM1 pseudogene 3) Homo sapiens
Analyze
Symbol: UFM1P3 (Ensembl: AC025647.1)
Name: UFM1 pseudogene 3 (Ensembl:ubiquitin-fold modifier 1 (UFM1) pseudogene)
RGD ID: 16559684
Description:
Type: processed_pseudogene
Previously known as: AC025647.1; AC025647.3; ubiquitin-fold modifier 1 (UFM1) pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl8100,165,226 - 100,165,478 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:68
Count of miRNA genes:63
Interacting mature miRNAs:68
Transcripts:ENST00000517879
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 62 22 274 42 231 37 41 5 337 26 144 137 7 13 22
Below cutoff 410 283 466 206 251 149 462 170 1161 100 351 415 61 146 284

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000517879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8100,165,226 - 100,165,478 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC UFM1P3 COSMIC
Ensembl Genes ENSG00000253299 Ensembl
GTEx ENSG00000253299 GTEx
Human Proteome Map UFM1P3 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-20 UFM1P3  UFM1 pseudogene 3  AC025647.3  ubiquitin-fold modifier 1 (UFM1) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-02-07 AC025647.3  ubiquitin-fold modifier 1 (UFM1) pseudogene  AC025647.1  ubiquitin-fold modifier 1 (UFM1) pseudogene  Symbol and/or name change 19259462 PROVISIONAL