TRIB1AL (TRIB1 associated lncRNA) - Rat Genome Database

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Gene: TRIB1AL (TRIB1 associated lncRNA) Homo sapiens
Analyze
Symbol: TRIB1AL (Ensembl: AC091114.1)
Name: TRIB1 associated lncRNA (Ensembl:novel transcript)
RGD ID: 16559583
Description:
Type: lncrna
Previously known as: AC091114.1; novel transcript
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl8125,466,939 - 125,541,373 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:197
Count of miRNA genes:188
Interacting mature miRNAs:191
Transcripts:ENST00000521991, ENST00000522815
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2 1
Low 3 1 111 94 11 94 10 16 3 91 37 26 1
Below cutoff 258 565 1014 334 584 324 695 362 363 224 469 845 16 400 401 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000521991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8125,486,680 - 125,530,605 (+)Ensembl
RefSeq Acc Id: ENST00000522815
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl8125,466,939 - 125,541,373 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TRIB1AL COSMIC
Ensembl Genes ENSG00000253111 Ensembl
GTEx ENSG00000253111 GTEx
Human Proteome Map TRIB1AL Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-05-15 TRIB1AL  TRIB1 associated lncRNA  AC091114.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL