LOC124900446 (small Cajal body-specific RNA 11) - Rat Genome Database

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Gene: LOC124900446 (small Cajal body-specific RNA 11) Homo sapiens
Analyze
Symbol: LOC124900446 (Ensembl: AL359771.2)
Name: small Cajal body-specific RNA 11
RGD ID: 16559569
Description:
Type: ncrna (Ensembl: scaRNA)
RefSeq Status: MODEL
Previously known as: AL359771.2
RGD Orthologs
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38113,696,070 - 13,696,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl113,696,070 - 13,696,199 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1p36.21NCBI
T2T-CHM13v2.0113,138,152 - 13,138,281 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
LOC124900446
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38113,696,070 - 13,696,199 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl113,696,070 - 13,696,199 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map1p36.21NCBI
T2T-CHM13v2.0113,138,152 - 13,138,281 (-)NCBIT2T-CHM13v2.0
LOC119866501
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha2719,456,206 - 19,456,312 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02727,326,512 - 27,326,618 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12727,188,743 - 27,188,849 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02727,172,639 - 27,172,745 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02719,162,791 - 19,162,897 (-)NCBIUU_Cfam_GSD_1.0

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:153
Count of miRNA genes:149
Interacting mature miRNAs:153
Transcripts:ENST00000517276
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 9 6 14 1 156 1 18 17 40 10 150 49 3 10
Below cutoff 59 33 43 3 82 2 92 33 258 13 167 61 3 20 59

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517276
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl113,696,070 - 13,696,199 (-)Ensembl
RefSeq Acc Id: XR_007067400
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38113,696,070 - 13,696,199 (-)NCBI
RefSeq Acc Id: XR_007071470
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0113,138,152 - 13,138,281 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124900446 COSMIC
Ensembl Genes ENSG00000253085 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000517276 ENTREZGENE
GTEx ENSG00000253085 GTEx
Human Proteome Map LOC124900446 Human Proteome Map
NCBI Gene LOC124900446 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124900446  small Cajal body-specific RNA 11  AL359771.2    Symbol and/or name change 5135510 APPROVED