LOC124903423 (small nucleolar RNA U83B) - Rat Genome Database

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Gene: LOC124903423 (small nucleolar RNA U83B) Homo sapiens
Analyze
Symbol: LOC124903423 (Ensembl: AL133485.1)
Name: small nucleolar RNA U83B
RGD ID: 16559548
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AL133485.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381450,844,625 - 50,844,712 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1450,844,625 - 50,844,712 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map14q22.1NCBI
T2T-CHM13v2.01445,050,773 - 45,050,860 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:273
Count of miRNA genes:261
Interacting mature miRNAs:271
Transcripts:ENST00000517136
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 16 21 14 9 17 8 57 7 27 13 25 23 1 15 27
Below cutoff 10 32 7 2 32 2 34 9 16 2 5 8 10 19

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000517136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1450,844,625 - 50,844,712 (+)Ensembl
RefSeq Acc Id: XR_007064405
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381450,844,625 - 50,844,712 (+)NCBI
RefSeq Acc Id: XR_007085199
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01445,050,773 - 45,050,860 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124903423 COSMIC
Ensembl Genes ENSG00000252945 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000517136 ENTREZGENE
GTEx ENSG00000252945 GTEx
Human Proteome Map LOC124903423 Human Proteome Map
NCBI Gene LOC124903423 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124903423  small nucleolar RNA U83B  AL133485.1    Symbol and/or name change 5135510 APPROVED