AC010261.2 (novel transcript) - Rat Genome Database

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Gene: AC010261.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC010261.2
Name: novel transcript
RGD ID: 16559158
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5112,192,020 - 112,210,139 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:273
Count of miRNA genes:252
Interacting mature miRNAs:257
Transcripts:ENST00000505825, ENST00000506875, ENST00000515563
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 12
Low 33 93 413 25 48 8 738 27 170 60 500 596 17 329 335
Below cutoff 1832 1894 892 325 542 190 2997 1650 2119 262 753 791 142 829 2033 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000505825
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5112,204,437 - 112,210,139 (+)Ensembl
RefSeq Acc Id: ENST00000506875
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5112,192,186 - 112,207,063 (+)Ensembl
RefSeq Acc Id: ENST00000515563
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5112,192,020 - 112,196,996 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC010261.2 COSMIC
Ensembl Genes ENSG00000251187 Ensembl
GTEx ENSG00000251187 GTEx
Human Proteome Map AC010261.2 Human Proteome Map