AC114980.1 (novel transcript) - Rat Genome Database

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Gene: AC114980.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC114980.1
Name: novel transcript
RGD ID: 16559100
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl593,860,669 - 93,863,825 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:93
Count of miRNA genes:93
Interacting mature miRNAs:93
Transcripts:ENST00000505668
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 1825 1792 1146 280 1305 136 3276 882 2360 194 1169 1329 150 1037 1963 3
Below cutoff 598 1188 575 340 627 326 1069 1304 1348 224 273 276 20 167 821 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000505668
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl593,860,669 - 93,863,825 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC114980.1 COSMIC
Ensembl Genes ENSG00000251023 Ensembl
GTEx ENSG00000251023 GTEx
Human Proteome Map AC114980.1 Human Proteome Map