TRIM7-AS1 (TRIM7 antisense RNA 1) - Rat Genome Database

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Pathways
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Gene: TRIM7-AS1 (TRIM7 antisense RNA 1) Homo sapiens
Analyze
Symbol: TRIM7-AS1 (Ensembl: AC008443.5)
Name: TRIM7 antisense RNA 1 (Ensembl:novel transcript)
RGD ID: 16559046
Description:
Type: lncrna
Previously known as: AC008443.6
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl5181,195,496 - 181,203,103 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:828
Count of miRNA genes:457
Interacting mature miRNAs:492
Transcripts:ENST00000419707, ENST00000502812, ENST00000509080, ENST00000511517, ENST00000512508, ENST00000514784
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 317 237 438 31 310 21 1640 333 1115 63 587 485 14 151 1072
Below cutoff 1928 2302 1107 446 1175 300 2563 1751 2441 304 770 1040 154 940 1647 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000419707
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5181,199,373 - 181,202,305 (+)Ensembl
RefSeq Acc Id: ENST00000502812
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5181,198,202 - 181,203,100 (+)Ensembl
RefSeq Acc Id: ENST00000509080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5181,198,200 - 181,203,103 (+)Ensembl
RefSeq Acc Id: ENST00000511517
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5181,199,368 - 181,203,101 (+)Ensembl
RefSeq Acc Id: ENST00000512508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5181,195,496 - 181,199,977 (+)Ensembl
RefSeq Acc Id: ENST00000514784
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl5181,200,913 - 181,203,103 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TRIM7-AS1 COSMIC
Ensembl Genes ENSG00000250900 Ensembl
GTEx ENSG00000250900 GTEx
Human Proteome Map TRIM7-AS1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-04-20 TRIM7-AS1  TRIM7 antisense RNA 1  AC008443.6  novel transcript  Symbol and/or name change 19259463 PROVISIONAL