NPY2R-AS1 (NPY2R antisense RNA 1) - Rat Genome Database

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Gene: NPY2R-AS1 (NPY2R antisense RNA 1) Homo sapiens
Analyze
Symbol: NPY2R-AS1
Name: NPY2R antisense RNA 1
RGD ID: 16558904
HGNC Page HGNC:55549
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AC104407.1; LOC107986321; uncharacterized LOC107986321
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384155,202,366 - 155,208,172 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4155,206,529 - 155,209,027 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map4q32.1NCBI
CHM1_14156,105,803 - 156,107,443 (-)NCBICHM1_1
T2T-CHM13v2.04158,538,441 - 158,540,074 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:154
Count of miRNA genes:144
Interacting mature miRNAs:149
Transcripts:ENST00000508687, ENST00000511017
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 5
Low 131 452 101 51 15 3 420 11 818 18 213 9 48 154 171
Below cutoff 1328 959 481 234 291 138 2009 568 1823 99 551 284 97 450 1154

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000508687
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4155,207,166 - 155,209,027 (-)Ensembl
RefSeq Acc Id: ENST00000511017
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4155,206,529 - 155,208,478 (-)Ensembl
RefSeq Acc Id: XR_001741894
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384155,202,366 - 155,208,172 (-)NCBI
Sequence:
RefSeq Acc Id: XR_007074302
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04158,538,441 - 158,540,074 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC NPY2R-AS1 COSMIC
Ensembl Genes ENSG00000250538 Ensembl
GTEx ENSG00000250538 GTEx
HGNC ID HGNC:55549 ENTREZGENE
Human Proteome Map NPY2R-AS1 Human Proteome Map
NCBI Gene LOC107986321 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-29 NPY2R-AS1  NPY2R antisense RNA 1  AC104407.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AC104407.1  novel transcript  LOC107986321  uncharacterized LOC107986321  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC107986321  uncharacterized LOC107986321  AC104407.1  novel transcript  Symbol and/or name change 5135510 APPROVED