AC068880.1 (ATPase, Ca++ transporting, plasma membrane 2 (ATP2B2) pseudogene) - Rat Genome Database

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Gene: AC068880.1 (ATPase, Ca++ transporting, plasma membrane 2 (ATP2B2) pseudogene) Homo sapiens
Analyze
Symbol: AC068880.1
Name: ATPase, Ca++ transporting, plasma membrane 2 (ATP2B2) pseudogene
RGD ID: 16558821
Description:
Type: unprocessed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl819,237,737 - 19,241,912 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:254
Count of miRNA genes:247
Interacting mature miRNAs:254
Transcripts:ENST00000507289
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 338 1
Below cutoff 76 144 112 40 68 23 307 78 223 11 162 87 18 100 203

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000507289
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl819,237,737 - 19,241,912 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC068880.1 COSMIC
Ensembl Genes ENSG00000250316 Ensembl
GTEx ENSG00000250316 GTEx
Human Proteome Map AC068880.1 Human Proteome Map