AC139495.2 (POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene) - Rat Genome Database

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Gene: AC139495.2 (POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene) Homo sapiens
Analyze
Symbol: AC139495.2
Name: POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene
RGD ID: 16558759
Description:
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AC139495.3; LOC728488; POM121 membrane glycoprotein (rat) pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38569,631,756 - 69,636,953 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl569,631,963 - 69,636,399 (+)EnsemblGRCh38hg38GRCh38
GRCh37568,927,583 - 68,932,780 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map5q13.2NCBI
CHM1_1568,927,564 - 68,928,289 (+)NCBICHM1_1
T2T-CHM13v2.0570,457,540 - 70,462,737 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:58
Interacting mature miRNAs:58
Transcripts:ENST00000515156, ENST00000538480
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 3 407 6 566 3 1 3 6 30 7 2
Low 1515 1312 1061 296 768 201 2164 754 1376 125 914 1075 98 1066 1271 2
Below cutoff 839 1246 603 296 197 229 2101 1388 2250 226 450 407 72 123 1488

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000515156
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl569,631,963 - 69,636,399 (+)Ensembl
Protein Sequences
GenBank Protein BAG58945 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC AC139495.2 COSMIC
Ensembl Genes ENSG00000250138 Ensembl, ENTREZGENE
GTEx ENSG00000250138 GTEx
Human Proteome Map AC139495.2 Human Proteome Map
NCBI Gene LOC728488 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC139495.2  POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene  LOC728488  POM121 membrane glycoprotein (rat) pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC728488  POM121 membrane glycoprotein (rat) pseudogene  AC139495.2  POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene  Symbol and/or name change 5135510 APPROVED
2020-02-07 AC139495.2  POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene  AC139495.3  POM121 membrane glycoprotein-like 1 (POM121L1) pseudogene  Symbol and/or name change 19259462 PROVISIONAL