AC097375.2 (novel transcript) - Rat Genome Database

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Gene: AC097375.2 (novel transcript) Homo sapiens
Analyze
Symbol: AC097375.2
Name: novel transcript
RGD ID: 16558630
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: VALIDATED
Previously known as: LOC102724700; uncharacterized LOC102724700
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384151,886,946 - 151,910,170 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4151,904,932 - 151,928,710 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map4q31.3NCBI
CHM1_14152,786,694 - 152,809,339 (-)NCBICHM1_1
T2T-CHM13v2.04155,210,036 - 155,233,277 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in AC097375.2
2 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 4q31.22-34.1(chr4:147317283-173675559)x3 copy number gain See cases [RCV000051788] Chr4:147317283..173675559 [GRCh38]
Chr4:148238435..174596710 [GRCh37]
Chr4:148457885..174833285 [NCBI36]
Chr4:4q31.22-34.1		 pathogenic
GRCh38/hg38 4q28.1-35.1(chr4:125432943-185761887)x3 copy number gain See cases [RCV000138578] Chr4:125432943..185761887 [GRCh38]
Chr4:126354098..186683041 [GRCh37]
Chr4:126573548..186920035 [NCBI36]
Chr4:4q28.1-35.1		 pathogenic|likely benign
GRCh38/hg38 4q28.3-35.2(chr4:134935616-190036318)x3 copy number gain See cases [RCV000143559] Chr4:134935616..190036318 [GRCh38]
Chr4:135856771..190957473 [GRCh37]
Chr4:136076221..191194467 [NCBI36]
Chr4:4q28.3-35.2		 pathogenic
GRCh38/hg38 4q26-35.2(chr4:118065569-190042639)x3 copy number gain See cases [RCV000051785] Chr4:118065569..190042639 [GRCh38]
Chr4:118986724..190828225 [GRCh37]
Chr4:119206172..191200788 [NCBI36]
Chr4:4q26-35.2		 pathogenic
GRCh38/hg38 4q31.21-35.2(chr4:145042668-189975519)x3 copy number gain See cases [RCV000135845] Chr4:145042668..189975519 [GRCh38]
Chr4:145963820..190828225 [GRCh37]
Chr4:146183270..191133668 [NCBI36]
Chr4:4q31.21-35.2		 pathogenic
GRCh38/hg38 4q31.1-35.2(chr4:138510532-189963195)x3 copy number gain See cases [RCV000136810] Chr4:138510532..189963195 [GRCh38]
Chr4:139431686..190828225 [GRCh37]
Chr4:139651136..191121344 [NCBI36]
Chr4:4q31.1-35.2		 pathogenic
GRCh38/hg38 4q27-35.2(chr4:121518223-190062270)x3 copy number gain See cases [RCV000051786] Chr4:121518223..190062270 [GRCh38]
Chr4:122439378..190828225 [GRCh37]
Chr4:122658828..191220419 [NCBI36]
Chr4:4q27-35.2		 pathogenic
GRCh38/hg38 4q31.3-32.1(chr4:151299810-160314050)x1 copy number loss See cases [RCV000135696] Chr4:151299810..160314050 [GRCh38]
Chr4:152220962..161235202 [GRCh37]
Chr4:152440412..161454652 [NCBI36]
Chr4:4q31.3-32.1		 likely pathogenic
GRCh38/hg38 4q31.21-31.3(chr4:140876253-152186578)x3 copy number gain See cases [RCV000051787] Chr4:140876253..152186578 [GRCh38]
Chr4:141797407..153107730 [GRCh37]
Chr4:142016857..153327180 [NCBI36]
Chr4:4q31.21-31.3		 pathogenic
GRCh38/hg38 4q28.3-35.2(chr4:131985253-190095391)x3 copy number gain See cases [RCV000137721] Chr4:131985253..190095391 [GRCh38]
Chr4:132906408..190828225 [GRCh37]
Chr4:133125858..191250527 [NCBI36]
Chr4:4q28.3-35.2		 pathogenic|likely benign
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:104
Interacting mature miRNAs:109
Transcripts:ENST00000510416
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 319
Low 3 2 3 12 3 2 51 3 1 6
Below cutoff 73 77 51 14 51 7 249 52 104 7 51 48 7 37 137

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000510416
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,904,932 - 151,928,710 (-)Ensembl
RefSeq Acc Id: ENST00000667963
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4151,904,932 - 151,910,212 (-)Ensembl
RefSeq Acc Id: NR_188363
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,904,934 - 151,910,170 (-)NCBI
T2T-CHM13v2.04155,228,039 - 155,233,277 (-)NCBI
RefSeq Acc Id: NR_188364
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384151,886,946 - 151,910,170 (-)NCBI
T2T-CHM13v2.04155,210,036 - 155,233,277 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC AC097375.2 COSMIC
Ensembl Genes ENSG00000249818 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000667963 ENTREZGENE
GTEx ENSG00000249818 GTEx
Human Proteome Map AC097375.2 Human Proteome Map
NCBI Gene LOC102724700 ENTREZGENE
RNAcentral URS00026A1AFE RNACentral
  URS00026A1D2D RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AC097375.2  novel transcript  LOC102724700  uncharacterized LOC102724700  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC102724700  uncharacterized LOC102724700  AC097375.2  novel transcript  Symbol and/or name change 5135510 APPROVED