LINC02972 (long intergenic non-protein coding RNA 2972) - Rat Genome Database

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Gene: LINC02972 (long intergenic non-protein coding RNA 2972) Homo sapiens
Analyze
Symbol: LINC02972 (Ensembl: AC092490.1)
Name: long intergenic non-protein coding RNA 2972 (Ensembl:novel transcript)
RGD ID: 16558622
Description:
Type: lncrna
Previously known as: AC092490.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl128,788,253 - 8,795,789 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:768
Count of miRNA genes:558
Interacting mature miRNAs:627
Transcripts:ENST00000422780, ENST00000514568, ENST00000540299
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High 1 1
Medium 13 702 32 26 758 29 316 11 7 7 27 26 1 86 2
Low 529 1270 380 114 626 91 2610 271 1672 122 715 852 33 719 1590 2
Below cutoff 1723 939 1142 379 369 256 1293 1696 1932 235 629 690 122 468 980

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000422780
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl128,788,257 - 8,794,497 (+)Ensembl
RefSeq Acc Id: ENST00000514568
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl128,788,274 - 8,795,789 (+)Ensembl
RefSeq Acc Id: ENST00000540299
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl128,788,274 - 8,794,336 (+)Ensembl
RefSeq Acc Id: ENST00000654855
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl128,788,270 - 8,790,183 (+)Ensembl
RefSeq Acc Id: ENST00000656408
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl128,788,253 - 8,794,955 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC LINC02972 COSMIC
Ensembl Genes ENSG00000249790 Ensembl
GTEx ENSG00000249790 GTEx
Human Proteome Map LINC02972 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-12-06 LINC02972  long intergenic non-protein coding RNA 2972  AC092490.1  novel transcript  Symbol and/or name change 19259463 PROVISIONAL