AL589765.4 (novel transcript) - Rat Genome Database

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Gene: AL589765.4 (novel transcript) Homo sapiens
Analyze
Symbol: AL589765.4
Name: novel transcript
RGD ID: 16558552
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1151,763,384 - 151,769,501 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:310
Count of miRNA genes:283
Interacting mature miRNAs:308
Transcripts:ENST00000512280
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 5 82 2 12 3 6 2 330 4 67 116
Low 2154 1638 1497 510 1233 365 3445 1554 3265 297 1206 1406 155 921 2202 4
Below cutoff 213 931 119 85 326 74 665 479 97 92 107 50 12 213 432

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000512280
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1151,763,384 - 151,769,501 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL589765.4 COSMIC
Ensembl Genes ENSG00000249602 Ensembl
GTEx ENSG00000249602 GTEx
Human Proteome Map AL589765.4 Human Proteome Map