AC004997.1 (novel protein) - Rat Genome Database

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Pathways
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Gene: AC004997.1 (novel protein) Homo sapiens
Analyze
Symbol: AC004997.1
Name: novel protein
RGD ID: 16558259
Description: FOUND IN cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2230,285,238 - 30,299,482 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)

References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2876
Count of miRNA genes:597
Interacting mature miRNAs:684
Transcripts:ENST00000330168, ENST00000418047, ENST00000434291, ENST00000434987, ENST00000447976
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system entire extraembryonic component
High
Medium
Low 7 23 4 58 5 12 3 24 27 73 38 1 1
Below cutoff 157 13 202 155 312 159 188 45 100 226 209 275 6 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000330168   ⟹   ENSP00000331267
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2230,285,238 - 30,295,843 (-)Ensembl
RefSeq Acc Id: ENST00000418047   ⟹   ENSP00000400319
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2230,285,247 - 30,299,482 (-)Ensembl
RefSeq Acc Id: ENST00000434291   ⟹   ENSP00000401535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2230,285,245 - 30,299,482 (-)Ensembl
RefSeq Acc Id: ENST00000434987   ⟹   ENSP00000415854
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2230,285,238 - 30,299,476 (-)Ensembl
RefSeq Acc Id: ENST00000447976   ⟹   ENSP00000406516
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2230,285,247 - 30,299,482 (-)Ensembl
Protein Sequences
Ensembl Protein ENSP00000331267.5
  ENSP00000400319.1
  ENSP00000401535.1
  ENSP00000406516.1
  ENSP00000415854.1
Reference Protein Sequences
RefSeq Acc Id: ENSP00000400319   ⟸   ENST00000418047
RefSeq Acc Id: ENSP00000406516   ⟸   ENST00000447976
RefSeq Acc Id: ENSP00000415854   ⟸   ENST00000434987
RefSeq Acc Id: ENSP00000401535   ⟸   ENST00000434291
RefSeq Acc Id: ENSP00000331267   ⟸   ENST00000330168
Protein Domains
Rab-GAP TBC


Additional Information

Database Acc Id Source(s)
COSMIC AC004997.1 COSMIC
Ensembl Genes ENSG00000248751 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENST00000330168.9 UniProtKB/TrEMBL
  ENST00000418047.5 UniProtKB/TrEMBL
  ENST00000434291.5 UniProtKB/TrEMBL
  ENST00000434987.5 UniProtKB/TrEMBL
  ENST00000447976.1 UniProtKB/TrEMBL
Gene3D-CATH putative rabgap domain of human tbc1 domain family member 14 like domains UniProtKB/TrEMBL
  VC0802-like UniProtKB/TrEMBL
  Ypt/Rab-GAP domain of gyp1p, domain 3 UniProtKB/TrEMBL
GTEx ENSG00000248751 GTEx
Human Proteome Map AC004997.1 Human Proteome Map
InterPro ACT-like_dom_sf UniProtKB/TrEMBL
  CASTOR1_ACT-like UniProtKB/TrEMBL
  CASTOR_ACT_dom UniProtKB/TrEMBL
  CASTOR_fam UniProtKB/TrEMBL
  Rab-GTPase-TBC_dom UniProtKB/TrEMBL
  Rab-GTPase_TBC_sf UniProtKB/TrEMBL
PANTHER CHROMOSOME 1, WHOLE GENOME SHOTGUN SEQUENCE UniProtKB/TrEMBL
  PTHR31131:SF3 UniProtKB/TrEMBL
  RAB GTPASE-ACTIVATING PROTEIN 1-LIKE UniProtKB/TrEMBL
  TBC1 DOMAIN FAMILY MEMBER 10B UniProtKB/TrEMBL
Pfam ACT_7 UniProtKB/TrEMBL
  CASTOR1_ACT-like UniProtKB/TrEMBL
  RabGAP-TBC UniProtKB/TrEMBL
PRINTS GATSLIKEFMLY UniProtKB/TrEMBL
PROSITE TBC_RABGAP UniProtKB/TrEMBL
SMART TBC UniProtKB/TrEMBL
Superfamily-SCOP SSF47923 UniProtKB/TrEMBL
  SSF55021 UniProtKB/TrEMBL
UniProt H0Y2U5_HUMAN UniProtKB/TrEMBL
  H0Y5R9_HUMAN UniProtKB/TrEMBL
  H7C1Q1_HUMAN UniProtKB/TrEMBL
  H7C471_HUMAN UniProtKB/TrEMBL