AC106872.4 (novel pseudogene containing a SPRY domain) - Rat Genome Database

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Gene: AC106872.4 (novel pseudogene containing a SPRY domain) Homo sapiens
Analyze
Symbol: AC106872.4
Name: novel pseudogene containing a SPRY domain
RGD ID: 16558083
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl4164,987,265 - 164,987,787 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:241
Count of miRNA genes:230
Interacting mature miRNAs:238
Transcripts:ENST00000510050
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 2 6 34 62 403 6 411 11 378 39 3 392
Below cutoff 273 209 441 42 134 10 1044 188 1072 81 297 447 32 133 669

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000510050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4164,987,265 - 164,987,787 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC106872.4 COSMIC
Ensembl Genes ENSG00000248229 Ensembl
GTEx ENSG00000248229 GTEx
Human Proteome Map AC106872.4 Human Proteome Map