PRKCH-AS1 (PRKCH antisense RNA 1) - Rat Genome Database

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Gene: PRKCH-AS1 (PRKCH antisense RNA 1) Homo sapiens
Analyze
Symbol: PRKCH-AS1 (Ensembl: AL359220.1)
Name: PRKCH antisense RNA 1 (Ensembl:novel transcript, antisense to PRKCH)
RGD ID: 16558015
Description:
Type: lncrna
Previously known as: AL359220.1; novel transcript, antisense to PRKCH
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1461,294,909 - 61,322,838 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:221
Count of miRNA genes:206
Interacting mature miRNAs:215
Transcripts:ENST00000500036, ENST00000554086
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2 4 2 1 1
Low 1026 536 1012 194 593 36 2719 573 1118 135 807 1430 170 1 1008 1479 5 2
Below cutoff 1360 2419 636 362 1018 361 1416 1568 2498 233 596 94 3 196 1303

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000500036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,303,021 - 61,322,818 (-)Ensembl
RefSeq Acc Id: ENST00000554086
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,298,164 - 61,322,794 (-)Ensembl
RefSeq Acc Id: ENST00000661303
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1461,294,909 - 61,322,838 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC PRKCH-AS1 COSMIC
Ensembl Genes ENSG00000247287 Ensembl
GTEx ENSG00000247287 GTEx
Human Proteome Map PRKCH-AS1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-05-03 PRKCH-AS1  PRKCH antisense RNA 1  AL359220.1  novel transcript, antisense to PRKCH  Symbol and/or name change 19259463 PROVISIONAL