AC008267.5 (general transcription factor II, i (GTF2I) pseudogene) - Rat Genome Database

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Gene: AC008267.5 (general transcription factor II, i (GTF2I) pseudogene) Homo sapiens
Analyze
Symbol: AC008267.5
Name: general transcription factor II, i (GTF2I) pseudogene
RGD ID: 16557900
Description:
Type: transcribed_unprocessed_pseudogene
Previously known as: AC008267.6
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl766,480,394 - 66,490,108 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:244
Count of miRNA genes:229
Interacting mature miRNAs:233
Transcripts:ENST00000424928
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 7 98 7
Low 2018 1918 1382 364 865 211 3476 1215 2476 130 1056 1224 155 1096 2224
Below cutoff 258 828 101 65 393 61 542 780 1001 81 77 114 6 101 463 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000424928
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl766,480,394 - 66,490,108 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC008267.5 COSMIC
Ensembl Genes ENSG00000244510 Ensembl
GTEx ENSG00000244510 GTEx
Human Proteome Map AC008267.5 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC008267.5  general transcription factor II, i (GTF2I) pseudogene  AC008267.6  general transcription factor II, i (GTF2I) pseudogene  Symbol and/or name change 19259462 PROVISIONAL