AL591895.1 (novel transcript) - Rat Genome Database

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Gene: AL591895.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL591895.1
Name: novel transcript
RGD ID: 16557691
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1225,840,883 - 225,846,522 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:145
Count of miRNA genes:142
Interacting mature miRNAs:145
Transcripts:ENST00000424332
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2390 2145 1514 507 1475 354 3494 1162 2308 352 1203 1478 159 1181 2127 2
Low 42 839 209 115 461 110 861 1031 1397 66 245 119 11 23 661 2
Below cutoff 6 2 7

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000424332
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1225,840,883 - 225,846,522 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL591895.1 COSMIC
Ensembl Genes ENSG00000242861 Ensembl
GTEx ENSG00000242861 GTEx
Human Proteome Map AL591895.1 Human Proteome Map