AL096701.3 (novel transcript) - Rat Genome Database

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Gene: AL096701.3 (novel transcript) Homo sapiens
Analyze
Symbol: AL096701.3
Name: novel transcript
RGD ID: 16557386
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2231,452,881 - 31,464,304 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:174
Count of miRNA genes:165
Interacting mature miRNAs:171
Transcripts:ENST00000464523, ENST00000483736
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 1089 710 912 177 906 109 1995 662 1438 123 955 1052 75 530 1243 4
Below cutoff 1233 1894 714 385 761 296 2121 1351 1855 253 446 482 94 627 1385

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000464523
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,454,251 - 31,464,056 (+)Ensembl
RefSeq Acc Id: ENST00000483736
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,461,664 - 31,464,204 (+)Ensembl
RefSeq Acc Id: ENST00000655902
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2231,452,881 - 31,464,304 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL096701.3 COSMIC
Ensembl Genes ENSG00000240591 Ensembl
GTEx ENSG00000240591 GTEx
Human Proteome Map AL096701.3 Human Proteome Map