AC004594.1 (novel transcript, antisense to CADPS2) - Rat Genome Database

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Gene: AC004594.1 (novel transcript, antisense to CADPS2) Homo sapiens
Analyze
Symbol: AC004594.1
Name: novel transcript, antisense to CADPS2
RGD ID: 16557371
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl7122,328,469 - 122,440,388 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:703
Count of miRNA genes:445
Interacting mature miRNAs:471
Transcripts:ENST00000422260, ENST00000482375, ENST00000591140, ENST00000592542, ENST00000593910, ENST00000602012, ENST00000602199
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 137 5 23 18 22 9 12 139 429 26 72 102 9 7 6
Below cutoff 2123 2026 1549 474 594 326 3800 1734 2925 316 1209 1401 152 1159 2404 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000422260
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,422,002 - 122,427,441 (+)Ensembl
RefSeq Acc Id: ENST00000482375
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,469 - 122,378,946 (+)Ensembl
RefSeq Acc Id: ENST00000591140
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,473 - 122,426,158 (+)Ensembl
RefSeq Acc Id: ENST00000592542
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,422,031 - 122,440,362 (+)Ensembl
RefSeq Acc Id: ENST00000593910
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,479 - 122,422,061 (+)Ensembl
RefSeq Acc Id: ENST00000602012
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,469 - 122,379,188 (+)Ensembl
RefSeq Acc Id: ENST00000602199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,469 - 122,379,218 (+)Ensembl
RefSeq Acc Id: ENST00000625850
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,426,010 (+)Ensembl
RefSeq Acc Id: ENST00000626052
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,382,296 (+)Ensembl
RefSeq Acc Id: ENST00000626092
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,379,041 (+)Ensembl
RefSeq Acc Id: ENST00000626241
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,331,138 (+)Ensembl
RefSeq Acc Id: ENST00000626740
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,440,377 (+)Ensembl
RefSeq Acc Id: ENST00000627005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,421,110 (+)Ensembl
RefSeq Acc Id: ENST00000627922
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,422,032 - 122,440,341 (+)Ensembl
RefSeq Acc Id: ENST00000628132
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,379,087 (+)Ensembl
RefSeq Acc Id: ENST00000628268
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,422,060 (+)Ensembl
RefSeq Acc Id: ENST00000630777
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,440,388 (+)Ensembl
RefSeq Acc Id: ENST00000630897
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,369,839 (+)Ensembl
RefSeq Acc Id: ENST00000631248
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl7122,328,492 - 122,426,075 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC004594.1 COSMIC
Ensembl Genes ENSG00000240499 Ensembl
GTEx ENSG00000240499 GTEx
Human Proteome Map AC004594.1 Human Proteome Map