AC108752.1 (novel transcript) - Rat Genome Database

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Gene: AC108752.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC108752.1
Name: novel transcript
RGD ID: 16557336
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl378,266,940 - 78,294,731 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:451
Count of miRNA genes:360
Interacting mature miRNAs:388
Transcripts:ENST00000461528, ENST00000484679, ENST00000496674
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 7 7 7 17 17 2
Low 24 39 19 87 19 31 14 39 126 94 88 3 1 1
Below cutoff 93 36 93 44 146 48 242 54 119 147 236 219 5 14 66 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000461528
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl378,266,943 - 78,294,056 (+)Ensembl
RefSeq Acc Id: ENST00000484679
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl378,266,940 - 78,291,191 (+)Ensembl
RefSeq Acc Id: ENST00000496674
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl378,267,006 - 78,294,731 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC108752.1 COSMIC
Ensembl Genes ENSG00000240241 Ensembl
GTEx ENSG00000240241 GTEx
Human Proteome Map AC108752.1 Human Proteome Map