AC125618.1 (novel transcript) - Rat Genome Database

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Gene: AC125618.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC125618.1
Name: novel transcript
RGD ID: 16557277
Description:
Type: lncrna
Previously known as: AC125618.2
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl3180,566,718 - 180,601,935 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:122
Count of miRNA genes:120
Interacting mature miRNAs:122
Transcripts:ENST00000472596
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 6
Low 63 25 458 10 213 10 261 71 674 70 574 358 4 18 193
Below cutoff 711 875 788 231 468 149 1989 995 2212 228 475 766 88 562 1273 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000472596
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl3180,566,718 - 180,601,935 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC125618.1 COSMIC
Ensembl Genes ENSG00000239774 Ensembl
GTEx ENSG00000239774 GTEx
Human Proteome Map AC125618.1 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-08-20 AC125618.1  novel transcript  AC125618.2  novel transcript  Symbol and/or name change 19259462 PROVISIONAL
2020-02-07 AC125618.2  novel transcript  AC125618.1  novel transcript  Symbol and/or name change 19259462 PROVISIONAL