LOC124902826 (small nucleolar RNA U13) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: LOC124902826 (small nucleolar RNA U13) Homo sapiens
Analyze
Symbol: LOC124902826 (Ensembl: AP000997.1)
Name: small nucleolar RNA U13
RGD ID: 16557202
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AP000997.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811115,627,082 - 115,627,185 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11115,627,082 - 115,627,185 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map11q23.3NCBI
T2T-CHM13v2.011115,640,248 - 115,640,351 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:380
Count of miRNA genes:331
Interacting mature miRNAs:356
Transcripts:ENST00000424313, ENST00000458951
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 13 5 9 5 1 1 4 13 10 1
Below cutoff 2 3 1 1 8 3 3 1 15 4 2 4

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000458951
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl11115,627,082 - 115,627,185 (-)Ensembl
RefSeq Acc Id: XR_007063011
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh3811115,627,082 - 115,627,185 (-)NCBI
RefSeq Acc Id: XR_007082515
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.011115,640,248 - 115,640,351 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124902826 COSMIC
Ensembl Genes ENSG00000239153 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000458951 ENTREZGENE
GTEx ENSG00000239153 GTEx
Human Proteome Map LOC124902826 Human Proteome Map
NCBI Gene LOC124902826 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124902826  small nucleolar RNA U13  AP000997.1    Symbol and/or name change 5135510 APPROVED