LOC124900188 (small nucleolar RNA ACA64) - Rat Genome Database

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Gene: LOC124900188 (small nucleolar RNA ACA64) Homo sapiens
Analyze
No known orthologs.
Symbol: LOC124900188 (Ensembl: AC097376.1)
Name: small nucleolar RNA ACA64
RGD ID: 16557187
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AC097376.1
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384139,436,368 - 139,436,494 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4139,436,368 - 139,436,494 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map4q31.1NCBI
T2T-CHM13v2.04142,756,019 - 142,756,145 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:327
Count of miRNA genes:308
Interacting mature miRNAs:323
Transcripts:ENST00000459613
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2 1 1 9 1 1 6 1 6 4
Low 189 121 243 96 387 84 368 70 286 147 332 310 22 47 185 3
Below cutoff 365 363 353 101 240 62 698 253 669 58 292 291 39 190 436

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000459613
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl4139,436,368 - 139,436,494 (-)Ensembl
RefSeq Acc Id: XR_007058554
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh384139,436,368 - 139,436,494 (-)NCBI
RefSeq Acc Id: XR_007075415
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.04142,756,019 - 142,756,145 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124900188 COSMIC
Ensembl Genes ENSG00000239005 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000459613 ENTREZGENE
GTEx ENSG00000239005 GTEx
Human Proteome Map LOC124900188 Human Proteome Map
NCBI Gene LOC124900188 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124900188  small nucleolar RNA ACA64  AC097376.1    Symbol and/or name change 5135510 APPROVED