LOC124906148 (small nucleolar RNA U13) - Rat Genome Database

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Pathways
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Gene: LOC124906148 (small nucleolar RNA U13) Homo sapiens
Analyze
Symbol: LOC124906148 (Ensembl: AC092654.1)
Name: small nucleolar RNA U13
RGD ID: 16557151
Description:
Type: snorna
RefSeq Status: MODEL
Previously known as: AC092654.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382161,558,544 - 161,558,646 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2161,558,544 - 161,558,646 (+)EnsemblGRCh38hg38GRCh38
Cytogenetic Map2q24.2NCBI
T2T-CHM13v2.02162,015,120 - 162,015,222 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:34
Interacting mature miRNAs:34
Transcripts:ENST00000458927
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 3 1 1 3 2 3 22 2
Below cutoff 1 3 2 4 47 3 2 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000458927
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2161,558,544 - 161,558,646 (+)Ensembl
RefSeq Acc Id: XR_007073067
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02162,015,120 - 162,015,222 (+)NCBI
RefSeq Acc Id: XR_007088737
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382161,558,544 - 161,558,646 (+)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124906148 COSMIC
Ensembl Genes ENSG00000238570 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000458927 ENTREZGENE
GTEx ENSG00000238570 GTEx
Human Proteome Map LOC124906148 Human Proteome Map
NCBI Gene LOC124906148 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124906148  small nucleolar RNA U13  AC092654.1    Symbol and/or name change 5135510 APPROVED