AC013267.3 (ribosomal protein S13 (RPS13) pseudogene) - Rat Genome Database

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Gene: AC013267.3 (ribosomal protein S13 (RPS13) pseudogene) Homo sapiens
Analyze
Symbol: AC013267.3
Name: ribosomal protein S13 (RPS13) pseudogene
RGD ID: 16557014
Description:
Type: processed_pseudogene
Previously known as: AC013267.1
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl224,968,958 - 24,969,224 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:90
Count of miRNA genes:90
Interacting mature miRNAs:90
Transcripts:ENST00000458227
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1
Low 23 42 44 11 148 13 141 17 130 20 75 52 26 97 1
Below cutoff 380 329 342 83 220 53 809 285 803 64 324 290 33 261 472 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000458227
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl224,968,958 - 24,969,224 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC013267.3 COSMIC
Ensembl Genes ENSG00000237953 Ensembl
GTEx ENSG00000237953 GTEx
Human Proteome Map AC013267.3 Human Proteome Map


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-02-07 AC013267.3  ribosomal protein S13 (RPS13) pseudogene  AC013267.1  ribosomal protein S13 (RPS13) pseudogene  Symbol and/or name change 19259462 PROVISIONAL