AL031289.1 (novel transcript) - Rat Genome Database

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Gene: AL031289.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL031289.1
Name: novel transcript
RGD ID: 16556996
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl140,669,089 - 40,687,588 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:355
Count of miRNA genes:331
Interacting mature miRNAs:351
Transcripts:ENST00000440100
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 7
Low 100 15 95 64 524 66 156 39 129 157 556 198 6 6 3
Below cutoff 228 265 228 141 196 117 563 89 517 124 181 233 28 78 315 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000440100
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl140,669,089 - 40,687,588 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL031289.1 COSMIC
Ensembl Genes ENSG00000237899 Ensembl
GTEx ENSG00000237899 GTEx
Human Proteome Map AL031289.1 Human Proteome Map