AL161629.1 (novel transcript) - Rat Genome Database

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Gene: AL161629.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL161629.1
Name: novel transcript
RGD ID: 16556910
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl989,825,964 - 90,019,549 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:203
Count of miRNA genes:194
Interacting mature miRNAs:201
Transcripts:ENST00000446201
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 35
Low 7 6 3 6 3 2 2 95 3 320 12 2
Below cutoff 174 57 129 38 65 35 198 101 715 43 51 56 3 22 141

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000446201
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,435 - 89,987,486 (+)Ensembl
RefSeq Acc Id: ENST00000652979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,416 - 90,015,674 (+)Ensembl
RefSeq Acc Id: ENST00000653040
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,407 - 90,015,647 (+)Ensembl
RefSeq Acc Id: ENST00000654395
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,396 - 90,001,467 (+)Ensembl
RefSeq Acc Id: ENST00000655497
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,388 - 90,015,647 (+)Ensembl
RefSeq Acc Id: ENST00000656288
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,825,964 - 90,015,741 (+)Ensembl
RefSeq Acc Id: ENST00000657253
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,422 - 90,015,647 (+)Ensembl
RefSeq Acc Id: ENST00000657411
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,411 - 90,015,647 (+)Ensembl
RefSeq Acc Id: ENST00000658655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,395 - 90,001,471 (+)Ensembl
RefSeq Acc Id: ENST00000659157
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,410 - 90,015,620 (+)Ensembl
RefSeq Acc Id: ENST00000659233
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,416 - 90,015,586 (+)Ensembl
RefSeq Acc Id: ENST00000659397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,826,030 - 90,019,549 (+)Ensembl
RefSeq Acc Id: ENST00000660571
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,410 - 90,015,619 (+)Ensembl
RefSeq Acc Id: ENST00000660980
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,416 - 90,015,647 (+)Ensembl
RefSeq Acc Id: ENST00000662981
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,416 - 90,015,647 (+)Ensembl
RefSeq Acc Id: ENST00000665098
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,978,275 - 90,000,846 (+)Ensembl
RefSeq Acc Id: ENST00000666051
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,386 - 90,015,624 (+)Ensembl
RefSeq Acc Id: ENST00000666443
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,410 - 90,001,395 (+)Ensembl
RefSeq Acc Id: ENST00000667587
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,416 - 90,015,647 (+)Ensembl
RefSeq Acc Id: ENST00000670775
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,422 - 90,001,052 (+)Ensembl
RefSeq Acc Id: ENST00000671506
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl989,969,416 - 90,015,647 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL161629.1 COSMIC
Ensembl Genes ENSG00000237626 Ensembl
GTEx ENSG00000237626 GTEx
Human Proteome Map AL161629.1 Human Proteome Map