AL121992.1 (novel transcript) - Rat Genome Database

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Gene: AL121992.1 (novel transcript) Homo sapiens
Analyze
Symbol: AL121992.1
Name: novel transcript
RGD ID: 16556799
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl115,586,136 - 15,603,626 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:563
Count of miRNA genes:462
Interacting mature miRNAs:518
Transcripts:ENST00000428945, ENST00000584345
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium
Low 85 8 570 13 333 10 204 173 358 44 644 498 7 1 166 1
Below cutoff 2157 2334 954 423 1239 270 3657 1770 3287 308 789 1058 165 1 893 2387 4

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000428945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl115,586,136 - 15,603,626 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL121992.1 COSMIC
Ensembl Genes ENSG00000237301 Ensembl
GTEx ENSG00000237301 GTEx
Human Proteome Map AL121992.1 Human Proteome Map