AC051618.1 (novel transcript) - Rat Genome Database

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Gene: AC051618.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC051618.1
Name: novel transcript
RGD ID: 16556701
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1054,864,674 - 54,869,122 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:89
Count of miRNA genes:88
Interacting mature miRNAs:89
Transcripts:ENST00000414295
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 1 236 4 3 1 3 1 189 1 1 1
Low 6 527 203 4 16 4 52 223 119 63 164 28 4 10
Below cutoff 138 138 230 6 31 7 166 101 765 51 213 84 1 52 73

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000414295
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1054,864,382 - 54,869,180 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC051618.1 COSMIC
Ensembl Genes ENSG00000236958 Ensembl
GTEx ENSG00000236958 GTEx
Human Proteome Map AC051618.1 Human Proteome Map