LOC124901612 (uncharacterized LOC124901612) - Rat Genome Database

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Gene: LOC124901612 (uncharacterized LOC124901612) Homo sapiens
Analyze
Symbol: LOC124901612 (Ensembl: AC008080.4)
Name: uncharacterized LOC124901612 (Ensembl:novel transcript)
RGD ID: 16556550
Description:
Type: ncrna (Ensembl: lncRNA)
RefSeq Status: MODEL
Previously known as: AC008080.4
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38733,793,167 - 33,803,171 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl733,793,167 - 33,803,190 (-)EnsemblGRCh38hg38GRCh38
Cytogenetic Map7p14.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in LOC124901612
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:387
Count of miRNA genes:318
Interacting mature miRNAs:326
Transcripts:ENST00000420185, ENST00000440034
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 5 1
Low 13 8 369 1 24 1 52 2 919 2 35 215 1 6 37
Below cutoff 1970 1951 1096 393 750 238 3481 1373 2628 198 1165 1061 158 1121 2148

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_007060281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC008080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000420185
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl733,793,168 - 33,803,130 (-)Ensembl
RefSeq Acc Id: ENST00000440034
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl733,795,063 - 33,803,171 (-)Ensembl
RefSeq Acc Id: ENST00000656190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl733,793,776 - 33,803,171 (-)Ensembl
RefSeq Acc Id: ENST00000663253
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl733,793,776 - 33,803,190 (-)Ensembl
RefSeq Acc Id: ENST00000668729
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl733,793,167 - 33,803,190 (-)Ensembl
RefSeq Acc Id: ENST00000669134
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl733,795,058 - 33,803,174 (-)Ensembl
RefSeq Acc Id: XR_007060281
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38733,793,167 - 33,803,171 (-)NCBI

Additional Information

Database Acc Id Source(s)
COSMIC LOC124901612 COSMIC
Ensembl Genes ENSG00000236494 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000668729 ENTREZGENE
GTEx ENSG00000236494 GTEx
Human Proteome Map LOC124901612 Human Proteome Map
NCBI Gene LOC124901612 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-04-12 LOC124901612  uncharacterized LOC124901612  AC008080.4  novel transcript  Symbol and/or name change 5135510 APPROVED