AC073333.1 (novel transcript) - Rat Genome Database

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Gene: AC073333.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC073333.1
Name: novel transcript
RGD ID: 16556342
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl716,695,871 - 16,719,898 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:659
Count of miRNA genes:469
Interacting mature miRNAs:537
Transcripts:ENST00000418907, ENST00000597084
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 1 2 1 1
Low 220 108 427 87 277 77 657 103 254 91 482 573 19 58 312 3
Below cutoff 1444 1281 843 301 418 173 2680 1351 1420 213 725 779 131 895 1667

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000418907
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl716,695,871 - 16,719,898 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC073333.1 COSMIC
Ensembl Genes ENSG00000235837 Ensembl
GTEx ENSG00000235837 GTEx
Human Proteome Map AC073333.1 Human Proteome Map