AL121672.2 (novel transcript) - Rat Genome Database

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Gene: AL121672.2 (novel transcript) Homo sapiens
Analyze
Symbol: AL121672.2
Name: novel transcript
RGD ID: 16556145
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2246,067,356 - 46,069,891 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:34
Count of miRNA genes:33
Interacting mature miRNAs:33
Transcripts:ENST00000412643
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 1 4 1
Low 1021 1075 1281 221 538 157 2578 633 2941 321 1207 1304 76 1 771 1652 1
Below cutoff 1372 1608 409 373 939 279 1659 1489 778 93 220 291 96 426 1091 3

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000412643
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2246,067,356 - 46,069,891 (-)Ensembl
RefSeq Acc Id: ENST00000686483
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2246,067,554 - 46,069,872 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL121672.2 COSMIC
Ensembl Genes ENSG00000235159 Ensembl
GTEx ENSG00000235159 GTEx
Human Proteome Map AL121672.2 Human Proteome Map