AC007879.3 (novel transcript) - Rat Genome Database

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Gene: AC007879.3 (novel transcript) Homo sapiens
Analyze
Symbol: AC007879.3
Name: novel transcript
RGD ID: 16556049
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl2207,186,717 - 207,236,066 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:120
Interacting mature miRNAs:120
Transcripts:ENST00000440545
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 12 1 213 1
Low 819 689 344 90 930 85 1508 437 559 125 521 742 17 590 861 2
Below cutoff 1533 2027 1233 458 837 317 2408 1310 2660 252 613 804 140 600 1561 2

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000417096
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2207,186,717 - 207,235,883 (-)Ensembl
RefSeq Acc Id: ENST00000448786
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2207,219,851 - 207,236,066 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC007879.3 COSMIC
Ensembl Genes ENSG00000234902 Ensembl
GTEx ENSG00000234902 GTEx
Human Proteome Map AC007879.3 Human Proteome Map