SYNCRIPP1 (SYNCRIP pseudogene 1) - Rat Genome Database

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Gene: SYNCRIPP1 (SYNCRIP pseudogene 1) Homo sapiens
Analyze
Symbol: SYNCRIPP1 (Ensembl: AL109618.1)
Name: SYNCRIP pseudogene 1 (Ensembl:NS1-associated protein 1 (NSAP1) pseudogene)
RGD ID: 16555866
HGNC Page HGNC:56945
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: AL109618.1; LOC149844; NS1-associated protein 1 (NSAP1) pseudogene; synaptotagmin binding cytoplasmic RNA interacting protein pseudogene
Related Functional Gene: SYNCRIP  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38206,213,597 - 6,215,339 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl206,213,699 - 6,215,381 (+)EnsemblGRCh38hg38GRCh38
GRCh37206,194,244 - 6,195,986 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20p12.3NCBI
HuRef206,150,632 - 6,152,839 (+)NCBIHuRef
CHM1_1206,193,778 - 6,195,985 (+)NCBICHM1_1
T2T-CHM13v2.0206,254,824 - 6,256,566 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:23934736  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:135
Count of miRNA genes:133
Interacting mature miRNAs:134
Transcripts:ENST00000408522, ENST00000434910
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 47 19 82 25 104 27 162 25 79 82 370 197 7 28 1
Below cutoff 1828 2083 1203 365 1047 229 3430 1652 2352 221 830 1184 143 996 2268 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000434910
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl206,213,699 - 6,215,381 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SYNCRIPP1 COSMIC
Ensembl Genes ENSG00000234241 Ensembl, ENTREZGENE
GTEx ENSG00000234241 GTEx
HGNC ID HGNC:56945 ENTREZGENE
Human Proteome Map SYNCRIPP1 Human Proteome Map
NCBI Gene LOC149844 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-12-18 SYNCRIPP1  SYNCRIP pseudogene 1  AL109618.1  NS1-associated protein 1 (NSAP1) pseudogene  Symbol and/or name change 19259463 PROVISIONAL
2020-06-25 AL109618.1  NS1-associated protein 1 (NSAP1) pseudogene  LOC149844  synaptotagmin binding cytoplasmic RNA interacting protein pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC149844  synaptotagmin binding cytoplasmic RNA interacting protein pseudogene  AL109618.1  NS1-associated protein 1 (NSAP1) pseudogene  Symbol and/or name change 5135510 APPROVED