AL354707.2 (60S ribosomal protein L35a (RPL35A) pseudogene) - Rat Genome Database

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Gene: AL354707.2 (60S ribosomal protein L35a (RPL35A) pseudogene) Homo sapiens
Analyze
Symbol: AL354707.2
Name: 60S ribosomal protein L35a (RPL35A) pseudogene
RGD ID: 16555486
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl96,675,284 - 6,675,614 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:119
Count of miRNA genes:108
Interacting mature miRNAs:111
Transcripts:ENST00000427308
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 6 6 19 6 1 3 1 1 25 1 2
Low 71 33 851 360 400 360 517 48 689 175 234 534 2 23 246 1
Below cutoff 406 335 446 115 203 71 920 376 1810 130 332 490 48 187 655 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000427308
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl96,675,284 - 6,675,614 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL354707.2 COSMIC
Ensembl Genes ENSG00000232946 Ensembl
GTEx ENSG00000232946 GTEx
Human Proteome Map AL354707.2 Human Proteome Map