AL109809.1 (pseudogene similar to F830045P16Rik) - Rat Genome Database

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Gene: AL109809.1 (pseudogene similar to F830045P16Rik) Homo sapiens
Analyze
Symbol: AL109809.1
Name: pseudogene similar to F830045P16Rik
RGD ID: 16555363
Description:
Type: pseudo (Ensembl: transcribed_unitary_pseudogene)
RefSeq Status: PREDICTED
Previously known as: cytoskeleton associated protein 2-like pseudogene; LOC100289473
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38201,773,365 - 1,779,746 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl201,767,957 - 1,779,995 (-)EnsemblGRCh38hg38GRCh38
GRCh37201,754,011 - 1,760,392 (-)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map20p13NCBI
HuRef201,703,973 - 1,710,354 (-)NCBIHuRef
CHM1_1201,754,104 - 1,760,485 (-)NCBICHM1_1
T2T-CHM13v2.0201,789,514 - 1,796,090 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:16339510   PMID:20210993   PMID:22197933  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:459
Count of miRNA genes:386
Interacting mature miRNAs:420
Transcripts:ENST00000418979, ENST00000458670
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 8 9 1 3 1 1
Low 70 684 77 82 875 32 1158 43 2376 87 675 340 52 177 708
Below cutoff 2032 1830 1252 398 547 290 2623 1610 1287 219 688 978 115 1000 1568 2

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000418979
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl201,767,957 - 1,779,995 (-)Ensembl
RefSeq Acc Id: ENST00000458670
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl201,773,365 - 1,779,746 (-)Ensembl
RefSeq Acc Id: NR_037142
RefSeq Status: PREDICTED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38201,773,365 - 1,779,746 (-)NCBI
T2T-CHM13v2.0201,789,514 - 1,796,090 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC AL109809.1 COSMIC
Ensembl Genes ENSG00000232528 Ensembl
  ENSG00000293374 ENTREZGENE
Ensembl Transcript ENST00000458670 ENTREZGENE
GTEx ENSG00000232528 GTEx
  ENSG00000293374 GTEx
Human Proteome Map AL109809.1 Human Proteome Map
NCBI Gene LOC100289473 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AL109809.1  pseudogene similar to F830045P16Rik  LOC100289473  cytoskeleton associated protein 2-like pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC100289473  cytoskeleton associated protein 2-like pseudogene  AL109809.1  pseudogene similar to F830045P16Rik  Symbol and/or name change 5135510 APPROVED