AL589935.1 (novel transcript, antisense OGFRL1) - Rat Genome Database

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Gene: AL589935.1 (novel transcript, antisense OGFRL1) Homo sapiens
Analyze
Symbol: AL589935.1
Name: novel transcript, antisense OGFRL1
RGD ID: 16555286
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl671,221,457 - 71,328,228 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2302
Count of miRNA genes:852
Interacting mature miRNAs:995
Transcripts:ENST00000412751, ENST00000423255, ENST00000432050, ENST00000434683, ENST00000450998, ENST00000585882, ENST00000585945, ENST00000586030, ENST00000586232, ENST00000586974, ENST00000587015, ENST00000587036, ENST00000587253, ENST00000587397, ENST00000588612, ENST00000589255, ENST00000590213, ENST00000590780, ENST00000591156, ENST00000602418
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 2
Low 151 193 579 149 109 24 900 112 623 193 505 985 127 115 692 2
Below cutoff 2149 2714 1072 407 1452 373 3299 2048 3054 208 896 574 41 1089 2094 1

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000412751
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,251,358 - 71,310,576 (-)Ensembl
RefSeq Acc Id: ENST00000423255
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,251,364 - 71,310,340 (-)Ensembl
RefSeq Acc Id: ENST00000432050
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,295,173 - 71,310,595 (-)Ensembl
RefSeq Acc Id: ENST00000434683
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,307,941 - 71,328,084 (-)Ensembl
RefSeq Acc Id: ENST00000450998
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,302,842 - 71,328,084 (-)Ensembl
RefSeq Acc Id: ENST00000585882
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,302,970 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000585945
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,307,945 - 71,328,058 (-)Ensembl
RefSeq Acc Id: ENST00000586030
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,295,176 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000586232
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,251,562 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000586974
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,308,026 - 71,311,648 (-)Ensembl
RefSeq Acc Id: ENST00000587015
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,308,126 - 71,328,228 (-)Ensembl
RefSeq Acc Id: ENST00000587036
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,302,978 - 71,328,059 (-)Ensembl
RefSeq Acc Id: ENST00000587253
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,281,385 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000587397
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,302,966 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000588612
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,277,219 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000589255
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,308,002 - 71,328,217 (-)Ensembl
RefSeq Acc Id: ENST00000590213
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,310,296 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000590780
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,307,941 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000591156
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,253,684 - 71,328,063 (-)Ensembl
RefSeq Acc Id: ENST00000602418
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,221,457 - 71,284,932 (-)Ensembl
RefSeq Acc Id: ENST00000612512
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,229,826 - 71,238,598 (-)Ensembl
RefSeq Acc Id: ENST00000614602
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,307,981 - 71,328,053 (-)Ensembl
RefSeq Acc Id: ENST00000615921
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,303,897 - 71,328,057 (-)Ensembl
RefSeq Acc Id: ENST00000618488
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl671,295,545 - 71,328,063 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL589935.1 COSMIC
Ensembl Genes ENSG00000232295 Ensembl
GTEx ENSG00000232295 GTEx
Human Proteome Map AL589935.1 Human Proteome Map