AC098824.1 (istidine-rich domain (CHORD)-containing 1 (CHORDC1) pseudogene) - Rat Genome Database

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Gene: AC098824.1 (istidine-rich domain (CHORD)-containing 1 (CHORDC1) pseudogene) Homo sapiens
Analyze
Symbol: AC098824.1
Name: istidine-rich domain (CHORD)-containing 1 (CHORDC1) pseudogene
RGD ID: 16555266
Description:
Type: processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl242,826,322 - 42,827,617 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:99
Count of miRNA genes:98
Interacting mature miRNAs:99
Transcripts:ENST00000453565
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 51 91 100 19 227 19 232 11 123 22 369 97 1 110 122
Below cutoff 1662 1805 1075 292 794 162 2849 1153 2316 222 879 1099 135 914 1794

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000453565
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl242,826,322 - 42,827,617 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC098824.1 COSMIC
Ensembl Genes ENSG00000232202 Ensembl
GTEx ENSG00000232202 GTEx
Human Proteome Map AC098824.1 Human Proteome Map