AC005208.1 (novel transcript) - Rat Genome Database

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Gene: AC005208.1 (novel transcript) Homo sapiens
Analyze
Symbol: AC005208.1
Name: novel transcript
RGD ID: 16554674
Description:
Type: lncrna
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1770,017,324 - 70,128,859 (-)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:157
Count of miRNA genes:153
Interacting mature miRNAs:154
Transcripts:ENST00000435112, ENST00000587325
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 7 3 7
Low 27 746 10 8 10 90 4 157 195 282 679 1 90
Below cutoff 624 128 359 198 183 91 891 491 1206 95 353 177 108 313 702

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000435112
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1770,017,324 - 70,128,859 (-)Ensembl
RefSeq Acc Id: ENST00000587325
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1770,018,111 - 70,073,282 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AC005208.1 COSMIC
Ensembl Genes ENSG00000230258 Ensembl
GTEx ENSG00000230258 GTEx
Human Proteome Map AC005208.1 Human Proteome Map