AL157384.1 (ATM interactor (ATMIN) pseudogene) - Rat Genome Database

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Gene: AL157384.1 (ATM interactor (ATMIN) pseudogene) Homo sapiens
Analyze
Symbol: AL157384.1
Name: ATM interactor (ATMIN) pseudogene
RGD ID: 16554662
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: ATM interactor pseudogene; LOC643342
Related Functional Gene: ATMIN  
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38995,292,309 - 95,295,007 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl995,292,338 - 95,294,810 (+)EnsemblGRCh38hg38GRCh38
GRCh37998,054,591 - 98,057,289 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map9q22.32NCBI
HuRef967,663,904 - 67,666,373 (+)NCBIHuRef
CHM1_1998,201,093 - 98,203,562 (+)NCBICHM1_1
T2T-CHM13v2.09107,461,820 - 107,464,518 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in AL157384.1
2 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:113
Interacting mature miRNAs:116
Transcripts:ENST00000445995
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 2 1
Below cutoff 983 902 626 138 423 74 1856 865 1521 114 725 646 72 457 1237 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000445995
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl995,292,338 - 95,294,810 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL157384.1 COSMIC
Ensembl Genes ENSG00000230221 Ensembl, ENTREZGENE
GTEx ENSG00000230221 GTEx
Human Proteome Map AL157384.1 Human Proteome Map
NCBI Gene LOC643342 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-06-25 AL157384.1  ATM interactor (ATMIN) pseudogene  LOC643342  ATM interactor pseudogene  Symbol and/or name change 19259462 PROVISIONAL
2020-06-18 LOC643342  ATM interactor pseudogene  AL157384.1  ATM interactor (ATMIN) pseudogene  Symbol and/or name change 5135510 APPROVED