AL391825.1 (proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) pseudogene) - Rat Genome Database

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Gene: AL391825.1 (proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) pseudogene) Homo sapiens
Analyze
Symbol: AL391825.1
Name: proteasome (prosome, macropain) activator subunit 3 (PA28 gamma; Ki) pseudogene
RGD ID: 16554526
Description:
Type: transcribed_processed_pseudogene
Latest Assembly: GRCh38.p14 Ensembl - Human Genome Assembly GRCh38 Ensembl
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p14 Ensembl1161,890,833 - 161,892,196 (+)EnsemblGRCh38hg38GRCh38
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:182
Count of miRNA genes:176
Interacting mature miRNAs:180
Transcripts:ENST00000457671, ENST00000458136
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 15 4 2 20 2 1 1 22 7
Low 1170 1555 1212 464 1590 396 2022 631 1654 195 1193 1265 75 795 1141 4
Below cutoff 1233 1356 500 152 302 64 2216 1456 1986 193 225 329 93 403 1558

Sequence

Nucleotide Sequences

Reference Sequences
RefSeq Acc Id: ENST00000457671
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1161,890,833 - 161,892,196 (+)Ensembl
RefSeq Acc Id: ENST00000458136
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1161,890,940 - 161,891,680 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC AL391825.1 COSMIC
Ensembl Genes ENSG00000229808 Ensembl
GTEx ENSG00000229808 GTEx
Human Proteome Map AL391825.1 Human Proteome Map